1. Explore and choose a sub-volume to pull from Constellation repository
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Drag to rotatePreviewed sliceSelected volume to fetch
Large selection? Transfer with Globus directly.
Requires your local machine has a Globus endpoint: see Globus Connect Personal to set up on your computer, or check with your compute cluster.
On your endpoint:
- Setup. Run
globus login. (if required, install globus-cli package, e.g.pip install globus-cli). To find endpoint ID, runglobus endpoint local-id. - Transfer. Paste the following commands into your terminal which will download the necessary chunks from Constellation. It prints a task ID and the status of the transfer can be tracked through
globus task show <ID>or at app.globus.org/activity. - Rebuild. Once the transfer is complete, download and run rebuild.py
using the command below to assemble the chunks into one
.npyarray. This step requires a Python environment withnumpyandzarr>=3(install withpip install numpy "zarr>=3"; zarr 3 needs Python 3.11+). Adjust the target path to point to the download folder if required.
2. View and download to your machine
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